- NR Boyle, JA Morgan. Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii. BMC Systems Biology. 2009, 3(1):4. [Highly Accessed]
- NR Boyle, AA Shastri, JA Morgan. Chapter 8: Network Stoichiometry in Plant Metabolic Networks. Edited by Schwender J. New York Springer; 2009.
- NR Boyle, JA Morgan. Computation of Metabolic Fluxes and Efficiencies for Biological Carbon Dioxide Fixation. Metabolic engineering. 2011, 13(2): p 150-158.
- NR Boyle, MLD Page, B Liu, IK Blaby, J Kropat, S Cokus, S Karpowicz, D Casero, J Shaw, A Hong-Hermesdorf, S Johnson, C Benning, M Pellegrini, A Grossman, S Merchant. Three acyltransferases and a nitrogen responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas reinhardtii. Journal of Biological Chemistry. 2012, 287(19): p 15811-15825.
- NR Boyle, RT Gill. Tools for Genome-Wide Strain Design and Construction. Current Opinion in Biotechnology. 2012, 23(5): p 666-671.
- EC Spindler, NR Boyle, REW Hancock, RT Gill. Genome-wide identification of genes conferring energy related resistance to a synthetic antimicrobial peptide (Bac8c). PLoS ONE. 2013, 8(1): e55052.
- LBA Woodruff, NR Boyle, RT Gill. A directed, genome-wide approach to select for improved ethanol production in a heterologous Escherichia coli production platform. Metabolic Engineering. 2013: 17(0) p 1-11.
- NR Boyle, TS Reynolds, R Evans, M Lynch, and RT Gill. Recombineering to Homogeneity: Extension of Multiplex Recombineering to Large-Scale Genome Editing. Biotechnology Journal. 2013, 8(5) p 515-522.
- IK Blaby, AG Glaesener, T Mettler, S Fritz-Gibbon, S Gallaher, B Liu, NR Boyle, J Kropat, M Stitt, S Johnson, C Benning, M Pellegrini, D Casero, SS Merchant. Systems-level analysis of N-starvation induced TAG accumulation in a Chlamydomonas starchless mutant. Plant Cell. 2013, 25(11):4305-23.
- Schmollinger S, Mühlhaus T, Boyle NR, Blaby IK, Casero D, Mettler T, Moseley JL, Kropat J, Sommer F, Strenkert D, Hemme D. Nitrogen-sparing mechanisms in Chlamydomonas affect the transcriptome, the proteome, and photosynthetic metabolism. The Plant Cell. 2014 Apr 1;26(4):1410-35.
- Zeitoun RI, Garst AD, Degen GD, Pines G, Mansell TJ, Glebes TY, Boyle NR, Gill RT. Multiplexed tracking of combinatorial genomic mutations in engineered cell populations. Nature biotechnology. 2015 Jun 1;33(6):631-7.
- Ramey CJ, Barón-Sola Á, Aucoin HR, Boyle NR. Genome engineering in cyanobacteria: where we are and where we need to go. ACS synthetic biology. 2015 Jun 5;4(11):1186-96.
- Boyle N. Special Issue on Genome Engineering. ACS Synthetic Biology. 2015 Nov 20;4(11):1165-6.
- Aucoin HR, Gardner J, Boyle NR. Omics in Chlamydomonas for Biofuel Production. Lipids in Plant and Algae Development. 2016. (pp. 447-469). Springer International Publishing.
- Liberatore MW, Peterson BN, Nottoli T, McCulloch JM, Jinkerson RE, Boyle NR, Posewitz MC. Effectiveness of cationically modified cellulose polymers for dewatering algae. Separation Science and Technology. 2016 Mar 23;51(5):892-8.